There is an accessor function for each slot in the S4 class FIMSFit, where
the function is named get_*() and the star can be replaced with the slot
name, e.g., get_input(). These accessor functions are the preferred way
to access objects stored in the available slots.
Usage
get_input(x)
# S4 method for class 'FIMSFit'
get_input(x)
get_report(x)
# S4 method for class 'FIMSFit'
get_report(x)
get_obj(x)
# S4 method for class 'FIMSFit'
get_obj(x)
get_opt(x)
# S4 method for class 'FIMSFit'
get_opt(x)
get_max_gradient(x)
# S4 method for class 'FIMSFit'
get_max_gradient(x)
get_sdreport(x)
# S4 method for class 'FIMSFit'
get_sdreport(x)
get_estimates(x)
# S4 method for class 'FIMSFit'
get_estimates(x)
get_number_of_parameters(x)
# S4 method for class 'FIMSFit'
get_number_of_parameters(x)
get_timing(x)
# S4 method for class 'FIMSFit'
get_timing(x)
get_version(x)
# S4 method for class 'FIMSFit'
get_version(x)
get_model_output(x)
# S4 method for class 'FIMSFit'
get_model_output(x)Arguments
- x
Output returned from
fit_fims().
Value
get_input() returns the list that was used to fit the FIMS model, which
is the returned object from create_default_parameters().
get_report() returns the TMB report, where anything that is flagged as
reportable in the C++ code is returned.
get_obj() returns the output from TMB::MakeADFun().
get_opt() returns the output from nlminb(), which is the minimizer used
in fit_fims().
get_max_gradient() returns the maximum gradient found when optimizing the
model.
get_sdreport() returns the list from TMB::sdreport().
get_estimates() returns a tibble of parameter values and their
uncertainties from a fitted model.
get_number_of_parameters() returns a vector of integers specifying the
number of fixed-effect parameters and the number of random-effect parameters
in the model.
get_timing() returns the amount of time it took to run the model in
seconds as a difftime object.
get_version() returns the package_version of FIMS that was used to fit
the model.
get_model_output() returns the finalized FIMS output as a JSON list.