Fisheries Integrated Modeling System (FIMS) • FIMSRTMB

This fork represents an RTMB extension of the NOAA Fisheries Integrated Modeling System (FIMS). Users can access functions within FIMS to build their own custom fisheries models using RTMB. Examples are provided in the vignettes. Currently, the only two functions available is logisitic selectivity and Beverton-Holt recruitment. Please see detailed instructions in RTMB_add_module on how to make a FIMS function available for RMTB.

**Note that this fork does not run a FIMS model, it only accesses FIMS functions. See the FIMS main repo for details on the FIMS R package.

Users and developers are welcome to submit ideas or questions using the GitHub Discussion Board. The Discussion Board is a place for all members of the assessment and open-source software community to ask and answer questions, share updates, have open-ended conversations, and follow along on decisions affecting FIMS. If you happen to find a bug, please report it to the issues page in this FIMSRTMB fork.

Installing FIMSRTMB

Install the latest version of FIMSRTMB from github:

remotes::install_github("NOAA-FIMS/FIMSRTMB)

Getting Help

Please report bugs along with a minimal reproducible example on the FIMS GitHub Issues page.

Code of Conduct

All contributors participating and contributing to the FIMS project are expected to adhere to the FIMS Code of Conduct.

Contributors

All contributions to this project are gratefully acknowledged using the allcontributors package following the all-contributors specification. Contributions of any kind are welcome!

Issue Authors

NOAA Disclaimer

This repository is a scientific product and is not official communication of the National Oceanic and Atmospheric Administration, or the United States Department of Commerce. All NOAA GitHub project code is provided on an ‘as is’ basis and the user assumes responsibility for its use. Any claims against the Department of Commerce or Department of Commerce bureaus stemming from the use of this GitHub project will be governed by all applicable Federal law. Any reference to specific commercial products, processes, or services by service mark, trademark, manufacturer, or otherwise, does not constitute or imply their endorsement, recommendation or favoring by the Department of Commerce. The Department of Commerce seal and logo, or the seal and logo of a DOC bureau, shall not be used in any manner to imply endorsement of any commercial product or activity by DOC or the United States Government.

Software code created by U.S. Government employees is not subject to copyright in the United States (17 U.S.C. section 105). The United States/Department of Commerce reserve all rights to seek and obtain copyright protection in countries other than the United States for Software authored in its entirety by the Department of Commerce. To this end, the Department of Commerce hereby grants to Recipient a royalty-free, nonexclusive license to use, copy, and create derivative works of the Software outside of the United States.

NOAA Fisheries

U.S. Department of Commerce | National Oceanographic and Atmospheric Administration | NOAA Fisheries

ChristineStawitz-NOAA	Andrea-Havron-NOAA	Bai-Li-NOAA	msupernaw	k-doering-NOAA	kellijohnson-NOAA	nathanvaughan-NOAA
JaneSullivan-NOAA	JonBrodziak	MOshima-PIFSC	iantaylor-NOAA	timjmiller	jimianelli	peterkuriyama-NOAA
abhinav-1305	KyleShertzer-NOAA	alexjensen-NOAA	mciechanumich	RicardoYin01	Srajald

chantelwetzel-noaa	Rick-Methot-NOAA	Huihualee-NOAA	EJDick-NOAA	jimianelli-NOAA	Craig44	James-Thorson-NOAA
kristanblackhart-NOAA	jbigman-NOAA	N-DucharmeBarth-NOAA	rklasky	cgrandin	e-perl-NOAA

Overview