Package index

Retrospective Analysis

Functions for running and plotting retrospective analyses.

run_fims_retrospective()

Run Retrospective Analysis

plot_retrospective()

Plot Retrospective Analysis

calculate_mohns_rho()

Calculate Mohn's rho for retrospective analysis

Likelihood Profile

Functions for running and plotting likelihood profiles.

run_fims_likelihood()

Run Likelihood Profile

plot_likelihood()

Plot Likelihood Profile

Helper Functions

Supporting functions for FIMS diagnostics.

run_modified_data_fims()

Function to remove a given number of years of data and run FIMS model This function is called by run_fims_retrospective()

run_modified_pars_fims()

Modify a parameter input and run a FIMS model This function is called by run_fims_likelihood()