Chapter 6 Software user guide

This section describes how to set-up and run the model.

6.1 Specifying the model

6.1.1 Naming conventions

TODO: add description and link to naming conventions

6.1.2 Structuing data input

You can add components to the model using S4 classes.

#TODO: add script to demonstrate how to structure data input

6.1.3 Defining model specifications

#TODO: add scripts detailing how to set up different components of the model

6.2 How to run the model

#TODO: add script with examples on how to run the model

6.3 Extracting model output

Here is how you get the model output.

#Todo add code for how to extract model output