Package index • ecosystemom

All functions

calc_truth(): Calculate "truth" for a species using ecosystem model outputs
calc_truth_agecomp_monthly(): Calculate "true" monthly age composition for a species
calc_truth_agecomp_yearly(): Calculate "true" yearly age composition for a species
calc_truth_index_monthly(): Calculate "true" monthly index for a species
calc_truth_index_yearly(): Calculate "true" yearly index for a species
calc_truth_monthly(): Calculate monthly "truth" for a species
create_dsem_inputs(): Create Structural Equation Model (SEM) Equations and Time Series Data
create_sem_equations(): Create SEM Equations from a Tibble
estimate_true_maturity(): Estimate true maturity parameters from ecosystem model input
estimate_true_selectivity(): Estimate true selectivity parameters from ecosystem model output
ewe_ecosim_base_nwatlantic ewe_ecosim_with_environmental_data_nwatlantic: Ecopath with Ecosim (EwE) models for the Northwest Atlantic
get_functional_groups(): Get the functional groups from an EwE file
load_csv_environmental_data(): Load environmental data from a CSV file
load_csv_ewe(): Load in EwE monthly output data
load_diet_composition(): Load diet composition data
load_model(): Load an ecosystem model
sample_dirichlet_multinomial(): Sample using a Dirichlet-multinomial distribution
sample_lognormal(): Sample using a lognormal distribution
sample_multinomial(): Sample using a multinomial distribution
split_functional_groups(): Split the functional groups into species and group
use_testthat_template(): Create tests/testthat/test-*.R test file