All functions

assign_values()

Assign environment variables to a list

create_par_section()

A function to create a section of the parameter input for each MAS type

create_seasons()

Create season attribute of the model

generic_assignment()

Assign environment variables to a list

make_branch()

Assign environment variables to a list

make_data()

FUnction to make a data object from input list

make_data_obj()

Function that creates a data object from a list

make_F()

A function to make an F list

make_likelihood_component()

Creates a likelihood component list for MAS

make_list()

Make a list of everything in function environment

map_SS_MAS()

Function mapping SS values to MAS

movement_matrix()

Creates a movement matrix for MAS input

name_lookup()

Function to map stock assessment quantities between platforms

output_plots()

Function to read in a MAS output txt file (deprecated) and create plots.

plot_NAtAge()

A function to plot N at age

write_config()

This function writes a JSON configuration file for MAS.

write_data()

This function writes a JSON data input file for MAS

write_test_data()

This function writes dummy data that is used in the "Introduction" vignette