derived.hpp

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#ifndef POPULATION_DYNAMICS_AGE_TO_LENGTH_CONVERSION_DERIVED_HPP
#define POPULATION_DYNAMICS_AGE_TO_LENGTH_CONVERSION_DERIVED_HPP
 
#include <algorithm>
#include <cstddef>
#include <memory>
#include <stdexcept>
 
#include "common/fims_math.hpp"
#include "base.hpp"
#include "population_dynamics/fleet/fleet.hpp"
#include "population_dynamics/growth/growth_model_adapter.hpp"
#include "population_dynamics/size/size_distribution_provider_base.hpp"
#include "population_dynamics/size/functors/size_bin_mapping.hpp"
 
namespace fims_popdy {
 
template <typename Type>
struct AgeToLengthConversionDerived : public AgeToLengthConversionBase<Type> {
  std::weak_ptr<Fleet<Type>> fleet_; 
  std::weak_ptr<SizeDistributionProviderBase<Type>>
      size_provider_; 
  std::shared_ptr<GrowthDerivedObservationBase<Type>>
      growth_observation_; 
  AgeToLengthConversionDerived(
      const std::shared_ptr<Fleet<Type>>& fleet_,
      const std::shared_ptr<GrowthDerivedObservationBase<Type>>&
          growth_observation_,
      const std::shared_ptr<SizeDistributionProviderBase<Type>>& size_provider_)
      : AgeToLengthConversionBase<Type>(),
        fleet_(fleet_),
        size_provider_(size_provider_),
        growth_observation_(growth_observation_) {}
 
  virtual ~AgeToLengthConversionDerived() {}
 
  virtual bool IsActive() const override {
    std::shared_ptr<Fleet<Type>> fleet_ptr = fleet_.lock();
    std::shared_ptr<SizeDistributionProviderBase<Type>> size_provider_ptr =
        size_provider_.lock();
 
    return fleet_ptr != nullptr && size_provider_ptr != nullptr &&
           growth_observation_ != nullptr &&
           growth_observation_->SupportsAgeToLengthConversionDerived() &&
           fleet_ptr->n_ages > 0 && fleet_ptr->n_lengths > 0 &&
           fleet_ptr->lengths.size() == fleet_ptr->n_lengths &&
           fleet_ptr->length_bin_edges.size() == fleet_ptr->n_lengths + 1 &&
           SizeBinMapping::HasStrictlyIncreasingEdges(
               fleet_ptr->length_bin_edges);
  }
 
  virtual bool PrepareForCurrentState() override {
    if (!this->IsActive()) {
      return false;
    }
 
    std::shared_ptr<SizeDistributionProviderBase<Type>> size_provider_ptr =
        TryGetSizeProvider();
    if (size_provider_ptr == nullptr) {
      return false;
    }
 
    const GrowthProducts<Type>* growth_products = TryGetGrowthProducts();
    if (growth_products == nullptr) {
      growth_observation_->PrepareGrowthProducts();
      growth_products = TryGetGrowthProducts();
    }
 
    if (growth_products == nullptr || growth_products->n_sexes != 1) {
      return false;
    }
 
    size_provider_ptr->PrepareSizeProducts();
    return true;
  }
 
  virtual bool BuildAgeToLengthConversionRow(
      size_t year, size_t age, fims::Vector<Type>& out_row) const override {
    out_row = BuildMappedFleetAgeToLengthConversionRow(year, age);
    std::shared_ptr<Fleet<Type>> fleet_ptr = fleet_.lock();
    return fleet_ptr != nullptr && out_row.size() == fleet_ptr->n_lengths;
  }
 
 protected:
  fims::Vector<Type> BuildPopulationProbSizeRow(std::size_t year_index,
                                                std::size_t age_index) const {
    std::shared_ptr<SizeDistributionProviderBase<Type>> size_provider_ptr =
        TryGetSizeProvider();
 
    if (size_provider_ptr == nullptr) {
      return fims::Vector<Type>();
    }
 
    const SizeGrid* population_size_grid = size_provider_ptr->TryGetSizeGrid();
    if (population_size_grid == nullptr ||
        !population_size_grid->IsConsistent() ||
        population_size_grid->n_bins == 0) {
      return fims::Vector<Type>();
    }
 
    fims::Vector<Type> prob_size_row(population_size_grid->n_bins);
 
    for (std::size_t size_bin_index = 0;
         size_bin_index < population_size_grid->n_bins; ++size_bin_index) {
      prob_size_row[size_bin_index] =
          size_provider_ptr->ProbSize(year_index, age_index, size_bin_index);
    }
 
    return prob_size_row;
  }
 
  bool TryFinalizeMappedProbabilityRow(
      fims::Vector<Type>& row, std::size_t expected_size,
      const Type& minimum_bin_prob = static_cast<Type>(1e-12)) const {
    if (row.size() != expected_size) {
      return false;
    }
 
    Type row_sum = static_cast<Type>(0.0);
    for (std::size_t i = 0; i < row.size(); ++i) {
      row[i] += minimum_bin_prob;
      row_sum += row[i];
    }
 
    for (std::size_t i = 0; i < row.size(); ++i) {
      row[i] /= row_sum;
    }
 
    return true;
  }
 
  fims::Vector<Type> BuildMappedFleetAgeToLengthConversionRow(
      std::size_t year_index, std::size_t age_index) const {
    std::shared_ptr<Fleet<Type>> fleet_ptr = fleet_.lock();
    std::shared_ptr<SizeDistributionProviderBase<Type>> size_provider_ptr =
        TryGetSizeProvider();
 
    if (fleet_ptr == nullptr || size_provider_ptr == nullptr) {
      return fims::Vector<Type>();
    }
 
    const SizeGrid* population_size_grid = size_provider_ptr->TryGetSizeGrid();
    if (population_size_grid == nullptr ||
        !population_size_grid->IsConsistent() ||
        population_size_grid->n_bins == 0) {
      return fims::Vector<Type>();
    }
 
    if (fleet_ptr->n_years == 0 || fleet_ptr->n_lengths == 0 ||
        fleet_ptr->lengths.size() != fleet_ptr->n_lengths ||
        fleet_ptr->length_bin_edges.size() != fleet_ptr->n_lengths + 1 ||
        !SizeBinMapping::HasStrictlyIncreasingEdges(
            fleet_ptr->length_bin_edges) ||
        year_index >= fleet_ptr->n_years || age_index >= fleet_ptr->n_ages) {
      return fims::Vector<Type>();
    }
 
    const fims::Vector<Type> population_prob_size =
        BuildPopulationProbSizeRow(year_index, age_index);
    if (population_prob_size.size() != population_size_grid->n_bins) {
      return fims::Vector<Type>();
    }
 
    const fims::Vector<double> mapping_fleet_edges =
        SizeBinMapping::ExpandDestinationEdgesToCoverSourceRange(
            population_size_grid->edges, fleet_ptr->length_bin_edges);
 
    const fims::Vector<fims::Vector<double>> rebin_weights =
        SizeBinMapping::BuildRebinWeights(population_size_grid->edges,
                                          mapping_fleet_edges);
 
    fims::Vector<Type> fleet_row =
        SizeBinMapping::ApplyRebinWeights(rebin_weights, population_prob_size);
 
    if (!TryFinalizeMappedProbabilityRow(fleet_row, fleet_ptr->n_lengths)) {
      throw std::runtime_error(
          "AgeToLengthConversionDerived produced an invalid mapped fleet "
          "probability row");
    }
 
    return fleet_row;
  }
 
  std::shared_ptr<SizeDistributionProviderBase<Type>> TryGetSizeProvider()
      const {
    return size_provider_.lock();
  }
 
  const GrowthProducts<Type>* TryGetGrowthProducts() const {
    if (growth_observation_ == nullptr ||
        !growth_observation_->SupportsAgeToLengthConversionDerived()) {
      return nullptr;
    }
 
    return growth_observation_->TryGetPreparedGrowthProducts();
  }
};
 
}  // namespace fims_popdy
 
#endif /* POPULATION_DYNAMICS_AGE_TO_LENGTH_CONVERSION_DERIVED_HPP */