FIMS  v0.9.3
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log_r.hpp
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1
9#ifndef FIMS_POPULATION_DYNAMICS_RECRUITMENT_LOG_R_HPP
10#define FIMS_POPULATION_DYNAMICS_RECRUITMENT_LOG_R_HPP
11
12#include "recruitment_base.hpp"
13#include "common/fims_vector.hpp"
14
15namespace fims_popdy {
16
20template <typename Type>
21struct LogR : public RecruitmentBase<Type> {
22 LogR() : RecruitmentBase<Type>() {}
23
24 virtual ~LogR() {}
25
34 virtual const Type evaluate_process(size_t pos) {
35 return this->recruitment->log_r[pos];
36 }
37
39 virtual const Type evaluate_mean(const Type& spawners, const Type& phi_0) {
40 return 0;
41 }
42};
43
44} // namespace fims_popdy
45
46#endif /* FIMS_POPULATION_DYNAMICS_RECRUITMENT_LOG_R_HPP */
fims_vector.hpp
Establishes the FIMS Vector class.
fims_popdy
The population dynamics of FIMS.
Definition catch_at_age.hpp:41
clear_internal
void clear_internal()
Clears the internal objects.
Definition rcpp_interface.hpp:235
recruitment_base.hpp
Serves as the parent class where recruitment functions are called.
fims_popdy::LogR
Log Devs class that returns the log of the input added to the log of the recruitment deviations.
Definition log_r.hpp:21
fims_popdy::LogR::evaluate_process
virtual const Type evaluate_process(size_t pos)
Log of recruitment approach to adding error to expected recruitment.
Definition log_r.hpp:34
fims_popdy::LogR::evaluate_mean
virtual const Type evaluate_mean(const Type &spawners, const Type &phi_0)
Evaluates expected recruitment from the stock–recruitment relationship before recruitment-process dev...
Definition log_r.hpp:39
fims_popdy::RecruitmentBase
Base class for all recruitment functors.
Definition recruitment_base.hpp:27
fims_popdy::RecruitmentBase::recruitment
std::shared_ptr< fims_popdy::RecruitmentBase< Type > > recruitment
Definition recruitment_base.hpp:48