The CatchAtAgeInterface class is used to interface with the CatchAtAge model. It inherits from the FisheryModelInterfaceBase class. More...

#include <rcpp_models.hpp>

Inheritance diagram for CatchAtAgeInterface:

Public Member Functions
	CatchAtAgeInterface ()
	The constructor.

	CatchAtAgeInterface (const CatchAtAgeInterface &other)
	Construct a new Catch At Age Interface object.

void	AddPopulation (uint32_t id)

void	DoReporting (bool report)
	Enable or disable reporting for the CatchAtAge model.

bool	IsReporting ()
	Check if reporting is enabled for the CatchAtAge model.

void	ReportAgeToLengthConversionDerivedTensor (bool report)
	Turn reporting of the Growth-derived age-to-length tensor on or off.

virtual uint32_t	get_id ()
	Method to get this id.

virtual void	finalize ()
	Extracts derived quantities back to the Rcpp interface object from the Information object.

std::string	population_to_json (PopulationInterface *population_interface)
	Method to convert a population to a JSON string.

std::string	derived_quantity_to_json (std::map< std::string, fims::Vector< double > >::iterator it, const fims_popdy::DimensionInfo &dim_info)

std::string	derived_quantities_component_to_json (std::map< std::string, fims::Vector< double > > &dqs, std::map< std::string, fims_popdy::DimensionInfo > &dim_info)
	Send the fleet-based derived quantities to the json file.

std::string	fleet_to_json (FleetInterface *fleet_interface)
	Method to convert a fleet to a JSON string.

virtual std::string	to_json ()
	Serialize the fishery model to a JSON string.

Public Member Functions inherited from FisheryModelInterfaceBase
	FisheryModelInterfaceBase ()
	The constructor.

	FisheryModelInterfaceBase (const FisheryModelInterfaceBase &other)
	Construct a new Data Interface Base object.

virtual	~FisheryModelInterfaceBase ()
	The destructor.

Rcpp::NumericVector	get_fixed_parameters_vector ()
	Get the vector of fixed effect parameters for the model.

Rcpp::NumericVector	get_random_parameters_vector ()
	Get the vector of random effect parameters for the model.

double	sum (const std::valarray< double > &v)
	Sum method to calculate the sum of an array or vector of doubles.

double	sum (const std::vector< double > &v)
	Sum method for a vector of doubles.

double	min (const std::valarray< double > &v)
	Minimum method to calculate the minimum of an array or vector of doubles.

std::valarray< double >	fabs (const std::valarray< double > &v)
	A function to compute the absolute value of a value array of floating-point values. It is a wrapper around std::fabs.

Public Member Functions inherited from FIMSRcppInterfaceBase
virtual bool	add_to_fims_tmb ()
	A virtual method to inherit to add objects to the TMB model.

std::string	value_to_string (double value)
	Report the variable value as a string.

std::string	make_dimensions (uint32_t start, uint32_t end, uint32_t rep=1)
	Make a string of dimensions for the model.

Additional Inherited Members
Public Attributes inherited from FisheryModelInterfaceBase
uint32_t	id
	The local id of the FleetInterfaceBase object.

Public Attributes inherited from FIMSRcppInterfaceBase
bool	finalized = false
	Is the object already finalized? The default is false.

Static Public Attributes inherited from FisheryModelInterfaceBase
static uint32_t	id_g = 1
	The static id of the FleetInterfaceBase object.

static std::map< uint32_t, std::shared_ptr< FisheryModelInterfaceBase > >	live_objects
	The map associating the IDs of FleetInterfaceBase to the objects. This is a live object, which is an object that has been created and lives in memory.

Static Public Attributes inherited from FIMSRcppInterfaceBase
static std::vector< std::shared_ptr< FIMSRcppInterfaceBase > >	fims_interface_objects
	FIMS interface object vectors.

Protected Types inherited from FisheryModelInterfaceBase
typedef std::set< uint32_t >::iterator	population_id_iterator
	Iterator for population ids.

Protected Attributes inherited from FisheryModelInterfaceBase
std::shared_ptr< std::set< uint32_t > >	population_ids
	The set of population ids that this fishery model operates on.

Detailed Description

The CatchAtAgeInterface class is used to interface with the CatchAtAge model. It inherits from the FisheryModelInterfaceBase class.

Constructor & Destructor Documentation

◆ CatchAtAgeInterface()

CatchAtAgeInterface::CatchAtAgeInterface ( const CatchAtAgeInterface & other )

inline

Construct a new Catch At Age Interface object.

Parameters

other

Member Function Documentation

◆ AddPopulation()

void CatchAtAgeInterface::AddPopulation ( uint32_t id )

inline

Method to add a population id to the set of population ids.

◆ derived_quantities_component_to_json()

std::string CatchAtAgeInterface::derived_quantities_component_to_json	(	std::map< std::string, fims::Vector< double > > &	dqs,
		std::map< std::string, fims_popdy::DimensionInfo > &	dim_info
	)

inline

Send the fleet-based derived quantities to the json file.

Returns: std::string

◆ derived_quantity_to_json()

std::string CatchAtAgeInterface::derived_quantity_to_json	(	std::map< std::string, fims::Vector< double > >::iterator	it,
		const fims_popdy::DimensionInfo &	dim_info
	)

inline

This function is used to convert the derived quantities of a population or fleet to a JSON string. This function is used to create the JSON output for the CatchAtAge model.

◆ DoReporting()

void CatchAtAgeInterface::DoReporting ( bool report )

inline

Enable or disable reporting for the CatchAtAge model.

This method is used to control whether reporting is performed for the CatchAtAge model. The implementation may depend on TMB_MODEL.

Parameters

report Boolean flag to enable (true) or disable (false) reporting.

◆ finalize()

virtual void CatchAtAgeInterface::finalize ( )

inlinevirtual

Extracts derived quantities back to the Rcpp interface object from the Information object.

Reimplemented from FIMSRcppInterfaceBase.

◆ get_id()

virtual uint32_t CatchAtAgeInterface::get_id ( )

inlinevirtual

Method to get this id.

Implements FisheryModelInterfaceBase.

◆ IsReporting()

bool CatchAtAgeInterface::IsReporting ( )

inline

Check if reporting is enabled for the CatchAtAge model.

Returns true if reporting is enabled, false otherwise. The implementation may depend on TMB_MODEL.

Returns: Boolean indicating reporting status.

◆ ReportAgeToLengthConversionDerivedTensor()

void CatchAtAgeInterface::ReportAgeToLengthConversionDerivedTensor ( bool report )

inline

Turn reporting of the Growth-derived age-to-length tensor on or off.

Parameters

report Whether to include the derived tensor in model reports.

◆ to_json()

virtual std::string CatchAtAgeInterface::to_json ( )

inlinevirtual

Serialize the fishery model to a JSON string.

This method provides a standardized interface for converting the state of a fishery model into a JSON-formatted string. The JSON output is intended for use in reporting, diagnostics, or data exchange between C++ and R. Derived classes should override this method to provide model-specific serialization logic.

Returns: A JSON string representing the current state of the model. The base implementation returns a placeholder string indicating the method is not yet implemented.

Reimplemented from FisheryModelInterfaceBase.

The documentation for this class was generated from the following file:

inst/include/interface/rcpp/rcpp_objects/rcpp_models.hpp

Public Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

◆ CatchAtAgeInterface()

Member Function Documentation

◆ AddPopulation()

◆ derived_quantities_component_to_json()

◆ derived_quantity_to_json()

◆ DoReporting()

◆ finalize()

◆ get_id()

◆ IsReporting()

◆ ReportAgeToLengthConversionDerivedTensor()

◆ to_json()