FisheryModelInterfaceBase Class Reference

The FisheryModelInterfaceBase class is the base class for all fishery models in the FIMS Rcpp interface. It inherits from the FIMSRcppInterfaceBase. More...

#include <rcpp_models.hpp>

Inheritance diagram for FisheryModelInterfaceBase:

Public Member Functions
	FisheryModelInterfaceBase ()
	The constructor.
	FisheryModelInterfaceBase (const FisheryModelInterfaceBase &other)
	Construct a new Data Interface Base object.
virtual	~FisheryModelInterfaceBase ()
	The destructor.
virtual std::string	to_json ()
	Serialize the fishery model to a JSON string.
virtual uint32_t	get_id ()=0
	Get the ID for the child fleet interface objects to inherit.
Rcpp::NumericVector	get_fixed_parameters_vector ()
	Get the vector of fixed effect parameters for the model.
Rcpp::NumericVector	get_random_parameters_vector ()
	Get the vector of random effect parameters for the model.
double	sum (const std::valarray< double > &v)
	Sum method to calculate the sum of an array or vector of doubles.
double	sum (const std::vector< double > &v)
	Sum method for a vector of doubles.
double	min (const std::valarray< double > &v)
	Minimum method to calculate the minimum of an array or vector of doubles.
std::valarray< double >	fabs (const std::valarray< double > &v)
	A function to compute the absolute value of a value array of floating-point values. It is a wrapper around std::fabs.
Public Member Functions inherited from FIMSRcppInterfaceBase
virtual bool	add_to_fims_tmb ()
	A virtual method to inherit to add objects to the TMB model.
virtual void	finalize ()
	Extracts derived quantities back to the Rcpp interface object from the Information object.
std::string	value_to_string (double value)
	Report the parameter value as a string.
std::string	make_dimensions (uint32_t start, uint32_t end, uint32_t rep=1)
	Make a string of dimensions for the model.

Public Attributes
uint32_t	id
	The local id of the FleetInterfaceBase object.
Public Attributes inherited from FIMSRcppInterfaceBase
bool	finalized = false
	Is the object already finalized? The default is false.

Static Public Attributes
static uint32_t	id_g = 1
	The static id of the FleetInterfaceBase object.
static std::map< uint32_t, std::shared_ptr< FisheryModelInterfaceBase > >	live_objects
	The map associating the IDs of FleetInterfaceBase to the objects. This is a live object, which is an object that has been created and lives in memory.
Static Public Attributes inherited from FIMSRcppInterfaceBase
static std::vector< std::shared_ptr< FIMSRcppInterfaceBase > >	fims_interface_objects
	FIMS interface object vectors.

Protected Types
typedef std::set< uint32_t >::iterator	population_id_iterator
	Iterator for population ids.

Protected Attributes
std::shared_ptr< std::set< uint32_t > >	population_ids
	The set of population ids that this fishery model operates on.

Detailed Description

The FisheryModelInterfaceBase class is the base class for all fishery models in the FIMS Rcpp interface. It inherits from the FIMSRcppInterfaceBase.

Constructor & Destructor Documentation

FisheryModelInterfaceBase()

FisheryModelInterfaceBase::FisheryModelInterfaceBase ( const FisheryModelInterfaceBase &  other )

inline

Construct a new Data Interface Base object.

Parameters

other

Member Function Documentation

fabs()

std::valarray< double > FisheryModelInterfaceBase::fabs ( const std::valarray< double > &  v )

inline

A function to compute the absolute value of a value array of floating-point values. It is a wrapper around std::fabs.

Parameters

v	A value array of floating-point values, where floating-point values is anything with decimals.

Returns

std::valarray<double>

get_fixed_parameters_vector()

Rcpp::NumericVector FisheryModelInterfaceBase::get_fixed_parameters_vector ( )

inline

Get the vector of fixed effect parameters for the model.

Returns a numeric vector containing the fixed effect parameters used in the model.

Returns

Rcpp::NumericVector of fixed effect parameters.

get_id()

virtual uint32_t FisheryModelInterfaceBase::get_id ( )

pure virtual

Get the ID for the child fleet interface objects to inherit.

Implemented in CatchAtAgeInterface.

get_random_parameters_vector()

Rcpp::NumericVector FisheryModelInterfaceBase::get_random_parameters_vector ( )

inline

Get the vector of random effect parameters for the model.

Returns a numeric vector containing the random effect parameters used in the model.

Returns

Rcpp::NumericVector of random effect parameters.

min()

double FisheryModelInterfaceBase::min ( const std::valarray< double > &  v )

inline

Minimum method to calculate the minimum of an array or vector of doubles.

Parameters

v

Returns

double

sum() [1/2]

double FisheryModelInterfaceBase::sum ( const std::valarray< double > &  v )

inline

Sum method to calculate the sum of an array or vector of doubles.

Parameters

v

Returns

double

sum() [2/2]

double FisheryModelInterfaceBase::sum ( const std::vector< double > &  v )

inline

Sum method for a vector of doubles.

Parameters

v

Returns

double

to_json()

virtual std::string FisheryModelInterfaceBase::to_json ( )

inlinevirtual

Serialize the fishery model to a JSON string.

This method provides a standardized interface for converting the state of a fishery model into a JSON-formatted string. The JSON output is intended for use in reporting, diagnostics, or data exchange between C++ and R. Derived classes should override this method to provide model-specific serialization logic.

Returns

A JSON string representing the current state of the model. The base implementation returns a placeholder string indicating the method is not yet implemented.

Reimplemented from FIMSRcppInterfaceBase.

Reimplemented in CatchAtAgeInterface.

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The documentation for this class was generated from the following file:

• inst/include/interface/rcpp/rcpp_objects/rcpp_models.hpp